Python Module Index

p | s


	p
	`pytfa` (Unix, Windows)	Simple Kinetic Models in Python

	s
	`skimpy` (Unix, Windows)	Simple Kinetic Models in Python
	`skimpy.analysis`
	`skimpy.analysis.gsa`
	`skimpy.analysis.mca`
	`skimpy.analysis.mca.concentration_control_fun`
	`skimpy.analysis.mca.elasticity_fun`
	`skimpy.analysis.mca.flux_control_fun`
	`skimpy.analysis.mca.jacobian_fun`
	`skimpy.analysis.mca.make`
	`skimpy.analysis.mca.prepare`
	`skimpy.analysis.mca.utils`
	`skimpy.analysis.mca.volume_ratio_function`
	`skimpy.analysis.modal`
	`skimpy.analysis.modal.modal_matrix`
	`skimpy.analysis.ode`
	`skimpy.analysis.ode.flux_fun`
	`skimpy.analysis.ode.gamma_fun`
	`skimpy.analysis.ode.ode_fun`
	`skimpy.analysis.ode.sample_concentrations`
	`skimpy.analysis.ode.symbolic_jacobian_fun`
	`skimpy.analysis.ode.utils`
	`skimpy.analysis.oracle`
	`skimpy.analysis.oracle.add_min_displacement`
	`skimpy.analysis.oracle.dummy_free_energies`
	`skimpy.analysis.oracle.fix_directionality`
	`skimpy.analysis.oracle.flux_concentration_ratios`
	`skimpy.analysis.oracle.load_pytfa_solution`
	`skimpy.analysis.oracle.minimum_fluxes`
	`skimpy.core`
	`skimpy.core.compartments`
	`skimpy.core.itemsets`
	`skimpy.core.kinmodel`
	`skimpy.core.modifiers`
	`skimpy.core.parameters`
	`skimpy.core.reactions`
	`skimpy.core.reactor`
	`skimpy.core.solution`
	`skimpy.inference`
	`skimpy.inference.experiment`
	`skimpy.inference.parameters`
	`skimpy.io`
	`skimpy.io.generate_from_cobra`
	`skimpy.io.generate_from_pytfa`
	`skimpy.io.model_generator`
	`skimpy.io.regulation`
	`skimpy.io.sbml`
	`skimpy.io.utils`
	`skimpy.io.yaml`
	`skimpy.mechanisms`
	`skimpy.mechanisms.bi_uni_reversible_hill`
	`skimpy.mechanisms.convenience`
	`skimpy.mechanisms.convenience_with_inihibition`
	`skimpy.mechanisms.direct_expression`
	`skimpy.mechanisms.gene_expression`
	`skimpy.mechanisms.generalized_elementary_kinetics`
	`skimpy.mechanisms.generalized_reversible_hill_n_n`
	`skimpy.mechanisms.generalized_reversible_hill_n_n_h1`
	`skimpy.mechanisms.generalized_reversible_hill_n_n_h1_with_inhibition`
	`skimpy.mechanisms.irrev_hill`
	`skimpy.mechanisms.irrev_m_n_hill`
	`skimpy.mechanisms.irrev_m_n_michaelis_menten`
	`skimpy.mechanisms.irrev_massaction`
	`skimpy.mechanisms.mechanism`
	`skimpy.mechanisms.michaelis_menten`
	`skimpy.mechanisms.rand_bi_bi_michaelis_menten`
	`skimpy.mechanisms.rev_massaction`
	`skimpy.mechanisms.uni_bi_reversible_hill`
	`skimpy.mechanisms.utils`
	`skimpy.sampling`
	`skimpy.sampling.cma_es_parameter_sampler`
	`skimpy.sampling.flux_concentration_sampler`
	`skimpy.sampling.flux_parameter_function`
	`skimpy.sampling.ga_flux_concentration_sampler`
	`skimpy.sampling.ga_parameter_sampler`
	`skimpy.sampling.parameter_sampler`
	`skimpy.sampling.saturation_parameter_function`
	`skimpy.sampling.simple_parameter_sampler`
	`skimpy.sampling.simple_resampler`
	`skimpy.sampling.utils`
	`skimpy.simulations`
	`skimpy.simulations.reactor`
	`skimpy.utils`
	`skimpy.utils.compile_sympy`
	`skimpy.utils.constants`
	`skimpy.utils.constructors`
	`skimpy.utils.conversions`
	`skimpy.utils.general`
	`skimpy.utils.logger`
	`skimpy.utils.medium`
	`skimpy.utils.moieties`
	`skimpy.utils.namespace`
	`skimpy.utils.scaling`
	`skimpy.utils.tabdict`
	`skimpy.utils.tensor`
	`skimpy.viz`
	`skimpy.viz.controll_coefficients`
	`skimpy.viz.escher`
	`skimpy.viz.flux_profile`
	`skimpy.viz.modal`
	`skimpy.viz.plotting`
	`skimpy.viz.sensitivty`
	`skimpy.viz.utils`