8.1.1.1.1.3.1.1. skimpy.analysis.modal.modal_matrix¶

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8.1.1.1.1.3.1.1.1. Functions¶

modal_matrix(kmodel, concentration_dict, parameters[, ...])

This function computes the transformation matrix W as described in Chapter 4 of

8.1.1.1.1.3.1.1.2. Module Contents¶

skimpy.modal_matrix(kmodel, concentration_dict, parameters, flux_modes=False, tolerance=1e-12)¶

This function computes the transformation matrix W as described in Chapter 4 of Heinrich, Reinhart, and Stefan Schuster. The regulation of cellular systems. Springer Science & Business Media, 2012.

The matrix W describes the composition of each pool variable X[i] whos dynamics are given by the eigenvalue lam[i] as a linear combination of the model variables S, which are concentrations.

Parameters:

kmodel – A skimpy.core.KineticModel with compiled mca functions
concentration_dict – A dict {‘variable_name’: value, }
parameters – A dict {‘param_name’: value, }

Returns: