8.1.1.5.1.14. skimpy.mechanisms.mechanism¶

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Licensed under the Apache License, Version 2.0 (the “License”); you may not use this file except in compliance with the License. You may obtain a copy of the License at

http://www.apache.org/licenses/LICENSE-2.0

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8.1.1.5.1.14.1. Classes¶

`KineticMechanism`	Helper class that provides a standard way to create an ABC using
`ElementrayReactionStep`

8.1.1.5.1.14.2. Module Contents¶

class skimpy.KineticMechanism(name, reactants, parameters=None, inhibitors=None, enzyme=None)¶

Bases: abc.ABC

Helper class that provides a standard way to create an ABC using inheritance.

parameter_reactant_links¶

name¶

reactants¶

inhibitors = None¶

_parameters = None¶

enzyme = None¶

__reduce__()¶

link_parameters_and_reactants()¶

property parameters¶

abstract property Reactants¶: Class to define metabolites and their roles in the reaction :return:

abstract property Parameters¶: Class to define parameters and their roles in the reaction :return:

abstract get_qssa_rate_expression()¶

abstract update_qssa_rate_expression()¶

abstract get_full_rate_expression()¶

abstract calculate_rate_constants()¶

get_parameters_from_expression(expr)¶

class skimpy.ElementrayReactionStep(educts, products, rate_constant_name)¶

Bases: object

educts¶

products¶

rate_constant_name¶

__str__()¶

__repr__()¶