8.1.1.2.1.5. skimpy.core.parameters

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Copyright 2019 Laboratory of Computational Systems Biotechnology (LCSB), Ecole Polytechnique Federale de Lausanne (EPFL), Switzerland

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8.1.1.2.1.5.1. Classes

ParameterValues

Parameters set for kinetic models wich can be indexed with symbols or

ParameterValuePopulation

8.1.1.2.1.5.2. Functions

load_parameter_population(filename[, lower_index, ...])

concat_populations(values[, kmodel, index])

8.1.1.2.1.5.3. Module Contents

class skimpy.ParameterValues(parameter_values, kmodel=None)

Bases: object

Parameters set for kinetic models wich can be indexed with symbols or

_parameter_values
_sym_to_str
__getitem__(item)
__setitem__(item, value)
items()
keys()
values()
class skimpy.ParameterValuePopulation(data, kmodel=None, index=None)

Bases: object

kmodel = None
__getitem__(index)
__len__()
__iter__()
__next__()
_dataframe(dropna=True)
mean()
Return Computes the mean parameter values for the population:

var()
Return Computes the variance parameter values for the population:

cov()
Return Computes the covaraince parameter values for the population:

log_mean()
Return Computes the logarithmic mean parameter values for the population:

log_var()
Return Computes the logarithmic variance parameter values for the population:

log_cov()
Return Computes the logarithmic covaraince parameter values for the population:

save(filename)

Saves the parameter population as hdf5 file :param filename: string XXX.h5 / XXX.hdf5 :return:

skimpy.load_parameter_population(filename, lower_index=None, upper_index=None)
skimpy.concat_populations(values, kmodel=None, index=None)