8.1.1.2.1.5. skimpy.core.parameters¶
[———]
Copyright 2019 Laboratory of Computational Systems Biotechnology (LCSB), Ecole Polytechnique Federale de Lausanne (EPFL), Switzerland
Licensed under the Apache License, Version 2.0 (the “License”); you may not use this file except in compliance with the License. You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an “AS IS” BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.
8.1.1.2.1.5.1. Classes¶
|
Parameters set for kinetic models wich can be indexed with symbols or |
|
8.1.1.2.1.5.2. Functions¶
|
|
|
8.1.1.2.1.5.3. Module Contents¶
- class skimpy.ParameterValues(parameter_values, kmodel=None)¶
Bases:
objectParameters set for kinetic models wich can be indexed with symbols or
- _parameter_values¶
- _sym_to_str¶
- __getitem__(item)¶
- __setitem__(item, value)¶
- items()¶
- keys()¶
- values()¶
- class skimpy.ParameterValuePopulation(data, kmodel=None, index=None)¶
Bases:
object- kmodel = None¶
- __getitem__(index)¶
- __len__()¶
- __iter__()¶
- __next__()¶
- _dataframe(dropna=True)¶
- mean()¶
- Return Computes the mean parameter values for the population:
- var()¶
- Return Computes the variance parameter values for the population:
- cov()¶
- Return Computes the covaraince parameter values for the population:
- log_mean()¶
- Return Computes the logarithmic mean parameter values for the population:
- log_var()¶
- Return Computes the logarithmic variance parameter values for the population:
- log_cov()¶
- Return Computes the logarithmic covaraince parameter values for the population:
- save(filename)¶
Saves the parameter population as hdf5 file :param filename: string XXX.h5 / XXX.hdf5 :return:
- skimpy.load_parameter_population(filename, lower_index=None, upper_index=None)¶
- skimpy.concat_populations(values, kmodel=None, index=None)¶