8.1.1.4.1.2. skimpy.io.generate_from_pytfa

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8.1.1.4.1.2.1. Classes

FromPyTFA

Class to generate Kinetic models from cobra

8.1.1.4.1.2.2. Module Contents

class skimpy.FromPyTFA(max_revesible_deltag_0=100, **kwargs)

Bases: skimpy.io.generate_from_cobra.FromCobra

Class to generate Kinetic models from cobra

max_revesible_deltag_0 = 100
import_model(pytfa_model, pytfa_solution_raw, concentration_scaling_factor=1.0)

Function to create a kinetic model from a constraint based model

Parameters:

  • pytfa_model

  • pytfa_solution – a prepresentative solution for the pytfa model solution.raw

Returns:

skimpy model

get_equlibrium_constant(pytfa_model, pytfa_solution_data, this_reaction, scaling_factor=1.0)