8.1.1.6.1.8. skimpy.sampling.simple_parameter_sampler¶

[———]

Licensed under the Apache License, Version 2.0 (the “License”); you may not use this file except in compliance with the License. You may obtain a copy of the License at

http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an “AS IS” BASIS, WITHOUT WARRANTIE CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.

8.1.1.6.1.8.1. Classes¶

SimpleParameterSampler

A simple parameter sampler that samples stable model parameters

8.1.1.6.1.8.2. Module Contents¶

class skimpy.SimpleParameterSampler(parameters=None)¶

Bases: skimpy.sampling.ParameterSampler

A simple parameter sampler that samples stable model parameters with respect to a steady state flux and concentration state

class Parameters¶

Bases: tuple

Parameter type specified for the parameters samples :return:

n_samples¶

sample(compiled_model, flux_dict, concentration_dict, only_stable=True, min_max_eigenvalues=False, seed=123, bounds_sample=(0, 1), max_trials=1000000.0)¶

Returns:

_compile_sampling_functions(model, concentrations, fluxes)¶: Compiles the function for sampling using cython :param model:

_sample_saturation_step_compiled(compiled_model, concentration_dict, flux_dict, parameters_to_resample=None, fixed_parameters=None)¶: Sample one set of saturations using cython complied functions :param compiled_model: :param concentration_dict: :param flux_dict: :return: