8.1.1.4.1.4. skimpy.io.regulation¶

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8.1.1.4.1.4.1. Functions¶

load_enzyme_regulation(kmodel, df_regulations_all)

Test function for loading regulations into an existing kmodel

8.1.1.4.1.4.2. Module Contents¶

skimpy.load_enzyme_regulation(kmodel, df_regulations_all)¶

Test function for loading regulations into an existing kmodel

Parameters:

kmodel – Existing kinetic model
df_regulations_all – a pandas df that has the following columns: reaction_id | regulator | regulation reaction_id must correspond with the names in the kinetic model reactor is the name of a metabolite, with the compartment after the _ regulation is either ‘inhibition’, ‘activation’, or ‘competitive inhibition’

Returns:

new_kmodel : A new kinetic model with regulations