8.1.1.8.1.5. skimpy.utils.general

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Copyright 2017 Laboratory of Computational Systems Biotechnology (LCSB), Ecole Polytechnique Federale de Lausanne (EPFL), Switzerland

Licensed under the Apache License, Version 2.0 (the “License”); you may not use this file except in compliance with the License. You may obtain a copy of the License at

http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an “AS IS” BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.

8.1.1.8.1.5.1. Functions

join_dicts(dicts)

get_stoichiometry(kinetic_model, variables)

check_is_symbol(s_in)

sanitize_cobra_vars(met_name)

get_all_subclasses(cls)

make_subclasses_dict(cls)

robust_index(in_var)

Indexing can be done with symbols or strings representing the symbol,

get_all_reactants(model)

8.1.1.8.1.5.2. Module Contents

skimpy.join_dicts(dicts)
skimpy.get_stoichiometry(kinetic_model, variables)
skimpy.check_is_symbol(s_in)
skimpy.sanitize_cobra_vars(met_name)
skimpy.get_all_subclasses(cls)
skimpy.make_subclasses_dict(cls)
skimpy.robust_index(in_var)

Indexing can be done with symbols or strings representing the symbol, so we harmonize it by returning the name of the symbol if the input is of type symbol

Parameters:

in_var (str or sympy.Symbol)

Returns:

skimpy.get_all_reactants(model)