8.1.1.1.1.5.1.4. skimpy.analysis.oracle.flux_concentration_ratios¶

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Licensed under the Apache License, Version 2.0 (the “License”); you may not use this file except in compliance with the License. You may obtain a copy of the License at

http://www.apache.org/licenses/LICENSE-2.0

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8.1.1.1.1.5.1.4.1. Attributes¶

`MIN_C`
`MAX_C`
`BIGM`
`EPSILON`
`LOG`
`LIN`

8.1.1.1.1.5.1.4.2. Classes¶

`BinUseVariable`
`BinVariable`
`FluxRatioCons`	Class to represent thermodynamics constraints.

8.1.1.1.1.5.1.4.3. Functions¶

`impose_turnover_concentation_ratios`(tmodel, ...[, ...])
`add_ratio_constraints`(model, lc, fwd, bwd, ratio[, ...])

8.1.1.1.1.5.1.4.4. Module Contents¶

skimpy.MIN_C = 1e-10¶

skimpy.MAX_C = 0.1¶

skimpy.BIGM¶

skimpy.EPSILON¶

skimpy.LOG = 'log'¶

skimpy.LIN = 'lin'¶

class skimpy.BinUseVariable(model, id_, **kwargs)¶

Bases: pytfa.optim.variables.ModelVariable, pytfa.optim.variables.BinaryVariable

prefix = 'BinUseVariable_'¶

class skimpy.BinVariable(model, id_, **kwargs)¶

Bases: pytfa.optim.variables.ModelVariable

prefix = 'BinVariable_'¶

class skimpy.FluxRatioCons(model, expr, id_, **kwargs)¶

Bases: pytfa.optim.constraints.ModelConstraint

Class to represent thermodynamics constraints. G: Flux_FW + Fluw_BW > min_flux

prefix = 'FluxRatioCons_'¶

skimpy.impose_turnover_concentation_ratios(tmodel, metabolites, tva, ratio, in_place=False, discretization=LOG, N=11)¶

skimpy.add_ratio_constraints(model, lc, fwd, bwd, ratio, concentration_range=(MIN_C, MAX_C), discretization=LOG, N=11)¶