8.1.1.1.1.4.1.6. skimpy.analysis.ode.utils¶

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http://www.apache.org/licenses/LICENSE-2.0

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8.1.1.1.1.4.1.6.1. Functions¶

`make_ode_fun`(kinetic_model, sim_type[, pool, ...])
`make_flux_fun`(kinetic_model, sim_type)
`make_gamma_fun`(kinetic_model)	Return a function that calculates the thermodynamic displacement for
`make_expressions`(variables, all_flux_expr[, ...])
`make_expresson_single_var`(input)
`get_expressions_from_model`(kinetic_model, sim_type[, ...])

8.1.1.1.1.4.1.6.2. Module Contents¶

skimpy.make_ode_fun(kinetic_model, sim_type, pool=None, custom_ode_update=None)¶

Parameters:

kinetic_model
sim_type

Returns:

skimpy.make_flux_fun(kinetic_model, sim_type)¶

Parameters:

kinetic_model
sim_type

Returns:

skimpy.make_gamma_fun(kinetic_model)¶: Return a function that calculates the thermodynamic displacement for all the reactions in a model :param kinetic_model: :return:

skimpy.make_expressions(variables, all_flux_expr, volume_ratios=None, pool=None)¶

skimpy.make_expresson_single_var(input)¶

skimpy.get_expressions_from_model(kinetic_model, sim_type, medium_symbols=None, biomass_symbol=None)¶