skimpy.utils.general
====================

.. py:module:: skimpy.utils.general

.. autoapi-nested-parse::

   .. module:: skimpy
      :platform: Unix, Windows
      :synopsis: Simple Kinetic Models in Python

   .. moduleauthor:: SKiMPy team

   [---------]

   Copyright 2017 Laboratory of Computational Systems Biotechnology (LCSB),
   Ecole Polytechnique Federale de Lausanne (EPFL), Switzerland

   Licensed under the Apache License, Version 2.0 (the "License");
   you may not use this file except in compliance with the License.
   You may obtain a copy of the License at

   http://www.apache.org/licenses/LICENSE-2.0

   Unless required by applicable law or agreed to in writing, software
   distributed under the License is distributed on an "AS IS" BASIS,
   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
   See the License for the specific language governing permissions and
   limitations under the License.



Functions
---------

.. autoapisummary::

   skimpy.utils.general.join_dicts
   skimpy.utils.general.get_stoichiometry
   skimpy.utils.general.check_is_symbol
   skimpy.utils.general.sanitize_cobra_vars
   skimpy.utils.general.get_all_subclasses
   skimpy.utils.general.make_subclasses_dict
   skimpy.utils.general.robust_index
   skimpy.utils.general.get_all_reactants


Module Contents
---------------

.. py:function:: join_dicts(dicts)

.. py:function:: get_stoichiometry(kinetic_model, variables)

.. py:function:: check_is_symbol(s_in)

.. py:function:: sanitize_cobra_vars(met_name)

.. py:function:: get_all_subclasses(cls)

.. py:function:: make_subclasses_dict(cls)

.. py:function:: robust_index(in_var)

   Indexing can be done with symbols or strings representing the symbol,
   so we harmonize it by returning the name of the symbol if the input is of
   type symbol

   :param in_var:
   :type in_var: str or sympy.Symbol
   :return:


.. py:function:: get_all_reactants(model)