skimpy.analysis.oracle.flux_concentration_ratios
================================================

.. py:module:: skimpy.analysis.oracle.flux_concentration_ratios

.. autoapi-nested-parse::

   .. module:: skimpy
      :platform: Unix, Windows
      :synopsis: Simple Kinetic Models in Python

   .. moduleauthor:: SKiMPy team

   [---------]

   Copyright 2021 Laboratory of Computational Systems Biotechnology (LCSB),
   Ecole Polytechnique Federale de Lausanne (EPFL), Switzerland

   Licensed under the Apache License, Version 2.0 (the "License");
   you may not use this file except in compliance with the License.
   You may obtain a copy of the License at

   http://www.apache.org/licenses/LICENSE-2.0

   Unless required by applicable law or agreed to in writing, software
   distributed under the License is distributed on an "AS IS" BASIS,
   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
   See the License for the specific language governing permissions and
   limitations under the License.



Attributes
----------

.. autoapisummary::

   skimpy.analysis.oracle.flux_concentration_ratios.MIN_C
   skimpy.analysis.oracle.flux_concentration_ratios.MAX_C
   skimpy.analysis.oracle.flux_concentration_ratios.BIGM
   skimpy.analysis.oracle.flux_concentration_ratios.EPSILON
   skimpy.analysis.oracle.flux_concentration_ratios.LOG
   skimpy.analysis.oracle.flux_concentration_ratios.LIN


Classes
-------

.. autoapisummary::

   skimpy.analysis.oracle.flux_concentration_ratios.BinUseVariable
   skimpy.analysis.oracle.flux_concentration_ratios.BinVariable
   skimpy.analysis.oracle.flux_concentration_ratios.FluxRatioCons


Functions
---------

.. autoapisummary::

   skimpy.analysis.oracle.flux_concentration_ratios.impose_turnover_concentation_ratios
   skimpy.analysis.oracle.flux_concentration_ratios.add_ratio_constraints


Module Contents
---------------

.. py:data:: MIN_C
   :value: 1e-10


.. py:data:: MAX_C
   :value: 0.1


.. py:data:: BIGM

.. py:data:: EPSILON

.. py:data:: LOG
   :value: 'log'


.. py:data:: LIN
   :value: 'lin'


.. py:class:: BinUseVariable(model, id_, **kwargs)

   Bases: :py:obj:`pytfa.optim.variables.ModelVariable`, :py:obj:`pytfa.optim.variables.BinaryVariable`


       


   .. py:attribute:: prefix
      :value: 'BinUseVariable_'



.. py:class:: BinVariable(model, id_, **kwargs)

   Bases: :py:obj:`pytfa.optim.variables.ModelVariable`


       


   .. py:attribute:: prefix
      :value: 'BinVariable_'



.. py:class:: FluxRatioCons(model, expr, id_, **kwargs)

   Bases: :py:obj:`pytfa.optim.constraints.ModelConstraint`


   Class to represent thermodynamics constraints.
   G: Flux_FW + Fluw_BW > min_flux


   .. py:attribute:: prefix
      :value: 'FluxRatioCons_'



.. py:function:: impose_turnover_concentation_ratios(tmodel, metabolites, tva, ratio, in_place=False, discretization=LOG, N=11)

.. py:function:: add_ratio_constraints(model, lc, fwd, bwd, ratio, concentration_range=(MIN_C, MAX_C), discretization=LOG, N=11)