skimpy.analysis.ode.utils
=========================

.. py:module:: skimpy.analysis.ode.utils

.. autoapi-nested-parse::

   .. module:: skimpy
      :platform: Unix, Windows
      :synopsis: Simple Kinetic Models in Python

   .. moduleauthor:: SKiMPy team

   [---------]

   Copyright 2017 Laboratory of Computational Systems Biotechnology (LCSB),
   Ecole Polytechnique Federale de Lausanne (EPFL), Switzerland

   Licensed under the Apache License, Version 2.0 (the "License");
   you may not use this file except in compliance with the License.
   You may obtain a copy of the License at

   http://www.apache.org/licenses/LICENSE-2.0

   Unless required by applicable law or agreed to in writing, software
   distributed under the License is distributed on an "AS IS" BASIS,
   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
   See the License for the specific language governing permissions and
   limitations under the License.



Functions
---------

.. autoapisummary::

   skimpy.analysis.ode.utils.make_ode_fun
   skimpy.analysis.ode.utils.make_flux_fun
   skimpy.analysis.ode.utils.make_gamma_fun
   skimpy.analysis.ode.utils.make_expressions
   skimpy.analysis.ode.utils.make_expresson_single_var
   skimpy.analysis.ode.utils.get_expressions_from_model


Module Contents
---------------

.. py:function:: make_ode_fun(kinetic_model, sim_type, pool=None, custom_ode_update=None)

   :param kinetic_model:
   :param sim_type:
   :return:


.. py:function:: make_flux_fun(kinetic_model, sim_type)

   :param kinetic_model:
   :param sim_type:
   :return:


.. py:function:: make_gamma_fun(kinetic_model)

   Return a function that calculates the thermodynamic displacement for
   all the reactions in a model
   :param kinetic_model:
   :return:


.. py:function:: make_expressions(variables, all_flux_expr, volume_ratios=None, pool=None)

.. py:function:: make_expresson_single_var(input)

.. py:function:: get_expressions_from_model(kinetic_model, sim_type, medium_symbols=None, biomass_symbol=None)