8.1.1.5.1.14. skimpy.mechanisms.mechanism

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Copyright 2017 Laboratory of Computational Systems Biotechnology (LCSB), Ecole Polytechnique Federale de Lausanne (EPFL), Switzerland

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8.1.1.5.1.14.1. Module Contents

8.1.1.5.1.14.1.1. Classes

KineticMechanism

Helper class that provides a standard way to create an ABC using

ElementrayReactionStep

class skimpy.KineticMechanism(name, reactants, parameters=None, inhibitors=None, enzyme=None)

Bases: abc.ABC

Helper class that provides a standard way to create an ABC using inheritance.

__reduce__(self)

helper for pickle

property parameters(self)
property Reactants(self)

Class to define metabolites and their roles in the reaction :return:

property Parameters(self)

Class to define parameters and their roles in the reaction :return:

abstract get_qssa_rate_expression(self)
abstract update_qssa_rate_expression(self)
abstract get_full_rate_expression(self)
abstract calculate_rate_constants(self)
get_parameters_from_expression(self, expr)
class skimpy.ElementrayReactionStep(educts, products, rate_constant_name)

Bases: object

__str__(self)

Return str(self).

__repr__(self)

Return repr(self).