8.1.1.4.1.4. skimpy.io.regulation

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Copyright 2017 Laboratory of Computational Systems Biotechnology (LCSB), Ecole Polytechnique Federale de Lausanne (EPFL), Switzerland

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8.1.1.4.1.4.1. Module Contents

8.1.1.4.1.4.1.1. Functions

load_enzyme_regulation(kmodel, df_regulations_all)

Test function for loading regulations into an existing kmodel
skimpy.load_enzyme_regulation(kmodel, df_regulations_all)

Test function for loading regulations into an existing kmodel

Parameters

  • kmodel – Existing kinetic model

  • df_regulations_all – a pandas df that has the following columns: reaction_id | regulator | regulation reaction_id must correspond with the names in the kinetic model reactor is the name of a metabolite, with the compartment after the _ regulation is either ‘inhibition’, ‘activation’, or ‘competitive inhibition’

Returns

new_kmodel : A new kinetic model with regulations