8.1.1.2.1.5. skimpy.core.parameters

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Copyright 2019 Laboratory of Computational Systems Biotechnology (LCSB), Ecole Polytechnique Federale de Lausanne (EPFL), Switzerland

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8.1.1.2.1.5.1. Module Contents

8.1.1.2.1.5.1.1. Classes

ParameterValues

Parameters set for kinetic models wich can be indexed with symbols or

ParameterValuePopulation

8.1.1.2.1.5.1.2. Functions

load_parameter_population(filename, lower_index=None, upper_index=None)

concat_populations(values, kmodel=None, index=None)

class skimpy.ParameterValues(parameter_values, kmodel=None)

Bases: object

Parameters set for kinetic models wich can be indexed with symbols or

__getitem__(self, item)
__setitem__(self, item, value)
items(self)
keys(self)
values(self)
class skimpy.ParameterValuePopulation(data, kmodel=None, index=None)

Bases: object

__getitem__(self, index)
__len__(self)
__iter__(self)
__next__(self)
_dataframe(self, dropna=True)
mean(self)
Return Computes the mean parameter values for the population

var(self)
Return Computes the variance parameter values for the population

cov(self)
Return Computes the covaraince parameter values for the population

log_mean(self)
Return Computes the logarithmic mean parameter values for the population

log_var(self)
Return Computes the logarithmic variance parameter values for the population

log_cov(self)
Return Computes the logarithmic covaraince parameter values for the population

save(self, filename)

Saves the parameter population as hdf5 file :param filename: string XXX.h5 / XXX.hdf5 :return:

skimpy.load_parameter_population(filename, lower_index=None, upper_index=None)
skimpy.concat_populations(values, kmodel=None, index=None)