8.1.1.1.1.4.1.6. skimpy.analysis.ode.utils¶
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Copyright 2017 Laboratory of Computational Systems Biotechnology (LCSB), Ecole Polytechnique Federale de Lausanne (EPFL), Switzerland
Licensed under the Apache License, Version 2.0 (the “License”); you may not use this file except in compliance with the License. You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
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8.1.1.1.1.4.1.6.1. Module Contents¶
8.1.1.1.1.4.1.6.1.1. Functions¶
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Return a function that calculates the thermodynamic displacement for |
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- skimpy.make_ode_fun(kinetic_model, sim_type, pool=None, custom_ode_update=None)¶
- Parameters
kinetic_model –
sim_type –
- Returns
- skimpy.make_flux_fun(kinetic_model, sim_type)¶
- Parameters
kinetic_model –
sim_type –
- Returns
- skimpy.make_gamma_fun(kinetic_model)¶
Return a function that calculates the thermodynamic displacement for all the reactions in a model :param kinetic_model: :return:
- skimpy.make_expressions(variables, all_flux_expr, volume_ratios=None, pool=None)¶
- skimpy.make_expresson_single_var(input)¶
- skimpy.get_expressions_from_model(kinetic_model, sim_type, medium_symbols=None, biomass_symbol=None)¶