8.1.1.1.1.2.1.7. skimpy.analysis.mca.utils

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Copyright 2017 Laboratory of Computational Systems Biotechnology (LCSB), Ecole Polytechnique Federale de Lausanne (EPFL), Switzerland

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8.1.1.1.1.2.1.7.1. Module Contents

8.1.1.1.1.2.1.7.1.1. Functions

get_reversible_fluxes(net_fluxes, displacements, reactions)

param net_fluxes

dict of net-fluxes

get_dlogx_dlogy(sympy_expression, variable)

Calc d_log_x/d_log_y = y/x*dx/dy

get_reduced_stoichiometry(kinetic_model, all_variables, all_dependent_ix=None)

get_dep_indep_vars_from_basis(L0, all_dependent_ix=None, concentrations=None)

8.1.1.1.1.2.1.7.1.2. Attributes

sparse_matrix

skimpy.sparse_matrix
skimpy.get_reversible_fluxes(net_fluxes, displacements, reactions)
Parameters

  • net_fluxes – dict of net-fluxes

  • displacements – dict of displacements for reversible reactions

  • reactions – list of reaction names

Returns

skimpy.get_dlogx_dlogy(sympy_expression, variable)

Calc d_log_x/d_log_y = y/x*dx/dy

skimpy.get_reduced_stoichiometry(kinetic_model, all_variables, all_dependent_ix=None)
skimpy.get_dep_indep_vars_from_basis(L0, all_dependent_ix=None, concentrations=None)