8.1.1.1.1.2.1.5. skimpy.analysis.mca.make¶
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Copyright 2017 Laboratory of Computational Systems Biotechnology (LCSB), Ecole Polytechnique Federale de Lausanne (EPFL), Switzerland
Licensed under the Apache License, Version 2.0 (the “License”); you may not use this file except in compliance with the License. You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
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8.1.1.1.1.2.1.5.1. Module Contents¶
8.1.1.1.1.2.1.5.1.1. Functions¶
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Create the elasticity and flux functions for MCA |
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Create an ElasticityFunction with elasticity = dlog(expression)/dlog(respective_variable) |
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Halter function to compute a full row of the elasticity matrix |
- skimpy.make_mca_functions(kinetic_model, parameter_list, sim_type, mca_type=NET)¶
Create the elasticity and flux functions for MCA :param kinmodel: :param parameter_list: :return:
- skimpy.make_elasticity_fun(expressions, respective_variables, variables, parameters, pool=None)¶
Create an ElasticityFunction with elasticity = dlog(expression)/dlog(respective_variable) :param expressions tab_dict of expressions (e.g. forward and backward fluxes) :param variables list of variables as string (e.g. concentrations or parameters)
- skimpy.make_elasticity_fun_single_cpu(expressions, respective_variables, variables, parameters)¶
- skimpy.make_elasticity_fun_multicore(expressions, respective_variables, variables, parameters, pool)¶
- skimpy.make_elasticity_single_row(input)¶
Halter function to compute a full row of the elasticity matrix :param input: input tuple of row, expression and all respective vars :return: