skimpy.viz.plotting
===================

.. py:module:: skimpy.viz.plotting

.. autoapi-nested-parse::

   .. module:: skimpy
      :platform: Unix, Windows
      :synopsis: Simple Kinetic Models in Python

   .. moduleauthor:: SKiMPy team

   [---------]

   Copyright 2020 Laboratory of Computational Systems Biotechnology (LCSB),
   Ecole Polytechnique Federale de Lausanne (EPFL), Switzerland

   Licensed under the Apache License, Version 2.0 (the "License");
   you may not use this file except in compliance with the License.
   You may obtain a copy of the License at

   http://www.apache.org/licenses/LICENSE-2.0

   Unless required by applicable law or agreed to in writing, software
   distributed under the License is distributed on an "AS IS" BASIS,
   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
   See the License for the specific language governing permissions and
   limitations under the License.



Functions
---------

.. autoapisummary::

   skimpy.viz.plotting.timetrace_plot
   skimpy.viz.plotting.boxplot
   skimpy.viz.plotting.plot_population_per_variable


Module Contents
---------------

.. py:function:: timetrace_plot(time, data, filename='out.html', legend=None, x_label='', y_label='', legend_location=None, backend='webgl', **kwargs)

   Classic time vs. Y-value plot.

   :param time:
   :param data:
   :param filename:
   :param legend:
   :return:


.. py:function:: boxplot(df, filename)

.. py:function:: plot_population_per_variable(data, filename, stride=1, variables=None, y_label='concentration', x_label='time', **kwargs)

   :param data:
   :param filename:
   :param stride: How many points to skip for the plot. `stride=100` will only plot every 100
   points
   :return: