skimpy.utils.compile_sympy
==========================

.. py:module:: skimpy.utils.compile_sympy

.. autoapi-nested-parse::

   .. module:: skimpy
      :platform: Unix, Windows
      :synopsis: Simple Kinetic Models in Python

   .. moduleauthor:: SKiMPy team

   [---------]

   Copyright 2017 Laboratory of Computational Systems Biotechnology (LCSB),
   Ecole Polytechnique Federale de Lausanne (EPFL), Switzerland

   Licensed under the Apache License, Version 2.0 (the "License");
   you may not use this file except in compliance with the License.
   You may obtain a copy of the License at

   http://www.apache.org/licenses/LICENSE-2.0

   Unless required by applicable law or agreed to in writing, software
   distributed under the License is distributed on an "AS IS" BASIS,
   WITHOUT WARRANTIE CONDITIONS OF ANY KIND, either express or implied.
   See the License for the specific language governing permissions and
   limitations under the License.



Attributes
----------

.. autoapisummary::

   skimpy.utils.compile_sympy.COMPILER
   skimpy.utils.compile_sympy.INCLUDE
   skimpy.utils.compile_sympy.FUNCTION_DEFINITION_HEADER
   skimpy.utils.compile_sympy.FUNCTION_DEFINITION_FOOTER


Functions
---------

.. autoapisummary::

   skimpy.utils.compile_sympy.make_cython_function
   skimpy.utils.compile_sympy.write_code_to_tempfile
   skimpy.utils.compile_sympy.generate_vectorized_code
   skimpy.utils.compile_sympy.generate_a_code_line_simplfied
   skimpy.utils.compile_sympy.generate_a_code_line


Module Contents
---------------

.. py:data:: COMPILER
   :value: 'gcc -fPIC -shared -w -O3'


.. py:data:: INCLUDE
   :value: Multiline-String

   .. raw:: html

      <details><summary>Show Value</summary>

   .. code-block:: python

      """#include <stdlib.h>
      #include <math.h>
      """

   .. raw:: html

      </details>



.. py:data:: FUNCTION_DEFINITION_HEADER
   :value: Multiline-String

   .. raw:: html

      <details><summary>Show Value</summary>

   .. code-block:: python

      """void function(double *input_array, double *output_array){ 
      """

   .. raw:: html

      </details>



.. py:data:: FUNCTION_DEFINITION_FOOTER
   :value: Multiline-String

   .. raw:: html

      <details><summary>Show Value</summary>

   .. code-block:: python

      """;
      }"""

   .. raw:: html

      </details>



.. py:function:: make_cython_function(symbols, expressions, quiet=True, simplify=True, optimize=False, pool=None)

.. py:function:: write_code_to_tempfile(code, file_path=None)

.. py:function:: generate_vectorized_code(inputs, expressions, simplify=True, optimize=False, pool=None)

.. py:function:: generate_a_code_line_simplfied(input, optimize=False)

.. py:function:: generate_a_code_line(input, optimize=False)