skimpy.analysis.oracle.dummy_free_energies
==========================================

.. py:module:: skimpy.analysis.oracle.dummy_free_energies

.. autoapi-nested-parse::

   .. module:: skimpy
      :platform: Unix, Windows
      :synopsis: Simple Kinetic Models in Python

   .. moduleauthor:: SKiMPy team

   [---------]

   Copyright 2018 Laboratory of Computational Systems Biotechnology (LCSB),
   Ecole Polytechnique Federale de Lausanne (EPFL), Switzerland

   Licensed under the Apache License, Version 2.0 (the "License");
   you may not use this file except in compliance with the License.
   You may obtain a copy of the License at

   http://www.apache.org/licenses/LICENSE-2.0

   Unless required by applicable law or agreed to in writing, software
   distributed under the License is distributed on an "AS IS" BASIS,
   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
   See the License for the specific language governing permissions and
   limitations under the License.



Attributes
----------

.. autoapisummary::

   skimpy.analysis.oracle.dummy_free_energies.BIGM
   skimpy.analysis.oracle.dummy_free_energies.BIGM_THERMO
   skimpy.analysis.oracle.dummy_free_energies.BIGM_DG
   skimpy.analysis.oracle.dummy_free_energies.BIGM_P
   skimpy.analysis.oracle.dummy_free_energies.EPSILON
   skimpy.analysis.oracle.dummy_free_energies.MAX_STOICH


Functions
---------

.. autoapisummary::

   skimpy.analysis.oracle.dummy_free_energies.add_undefined_delta_g
   skimpy.analysis.oracle.dummy_free_energies.add_dummy_delta_g


Module Contents
---------------

.. py:data:: BIGM

.. py:data:: BIGM_THERMO

.. py:data:: BIGM_DG

.. py:data:: BIGM_P

.. py:data:: EPSILON

.. py:data:: MAX_STOICH
   :value: 10


.. py:function:: add_undefined_delta_g(_tmodel, solution, delta_g_std=-10, delta_g_std_err=2, add_displacement=True, inplace=True, exclude_reactions=[])

.. py:function:: add_dummy_delta_g(tmodel, rxn, delta_g_std=-100, delta_g_std_err=2, add_displacement=True)